EST annotation stuff
This is my old site that I'm keeping up for historical purposes and is no longer updated. You probably want to see my new site.
Research papers
- Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)
- Automated Gene Ontology annotation for anonymous sequence data
- prot4EST: Translating Expressed Sequence Tags from neglected genomes
- Question: Why not just use blastx? Answer: Does a bad job of detecting frame-shifts/gaps caused by errors in cDNA/EAST sequencing.
Interesting examples
- Tree Fruit Technology: can display EST clusters and top BLAST hits against nr and A. thialana. Is a good example of what to provide?
- GOblet: BLASTs against GO-annotated databases, type of program that we need
- Fungal Genomics Project
annot8r_blast2go
Backlinks:
SamatScratchWiki
SamatScratchWiki
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